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JEVBase: An Interactive Resource for Protein Annotationof JE Virus
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International Journal of Biometrics and Bioinformatics (IJBB)
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Volume:  3    Issue:  4
Pages:  31-66
Publication Date:   August 2009
ISSN (Online): 1985-2347
Pages 
59 - 66
Author(s)  
 
Published Date   
21-10-2009 
Publisher 
CSC Journals, Kuala Lumpur, Malaysia
ADDITIONAL INFORMATION
Keywords   Abstract   References   Cited by   Related Articles   Collaborative Colleague
 
KEYWORDS:   JEVBase, SVMProt, , Protein annotation database, Functional database, Japanese encephalitis 
 
 
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Databases containing proteome ic information have become indispensable for virology related studies. Rajendra Memorial Research Institute of Medical Sciences (RMRIMS) has compiled and maintained a functional and molecular annotation database (http://www.jevbase.biomedinformri.org) commonly referred to as JEVBase. This database facilitates significant relationship between molecular analysis, cleavage sites, possible protein functional families assigned to different proteins of Japanese encephalitis virus (JEV). Identification of different protein functions and molecular analysis facilitates a mechanistic understanding of (JEV) infection and opens novel means for drug development. JEVBase database aims to be a resource for scientists working on JE virus. 
 
 
 
1 T. Solomon, L. T. T. Thao, N. M. Dung, R. Kneen, N. T. Hung, A. Nisalak, D. W. Vaughn, J. Farrar, T. T. Hien, N. J. White and M. J. Cardosa. “ Rapid Diagnosis of Japanese Encephalitis by Using an Immunoglobulin M Dot Enzyme Immunoassay”. Journal of Clinical Microbiology, 36, 2030-2034, 1998
2 E.L. Buescher and W. F. Scherer. “Ecologic studies of Japanese encephalitis virus in Japan. IX. Epidemiologic correlations and conclusions”. Am. J. Trop. Med. Hyg., 8,719-722, 1959
3 H. Sumiyoshi, C. Mori, I. Fuke, K. Morita, S. Kuhara, J. Kondou, Y. Kikuchi, H. Nagamatu and A. Igarashi. “Complete nucleotide sequence of the Japanese encephalitis virus genome RNA”. Virology, 161, 497-510, 1987
4 F. Zhang, W. Ma, L. Zhang, M. Aasa-Chapman and H. Zhang. “Expression of particulate-form of Japanese encephalitis virus envelope protein in a stably transfected Drosophila cell line”. Virology, 4, 17-24, 2007
5 X. Liu, S. Cao, R. Zhou, G. Xu, S. Xiao, Y. Yang, M. Sun, Y. Li and H. Chen. “Inhibition of Japanese encephalitis virus NS1 protein expression in cell by small interfering RNAs”, Virus Genes, 33, 69-75, 2006
6 D. Eisenberg, C.A. Marcotte, I. Xenarios and T.O. Yeates. “Protein function in the post-genomic era”. Nature , 405, 823–826, 2000
7 S. Henikoff, E. A. Greene, S. Pietrokovski, P. Bork,T.K. Attwood and L. Hood. “Gene families: the taxonomy of protein paralogs and chimeras”. Science, 278, 609–614, 1997
8 C.Z. Cai, L.Y. Han, Z.L. Ji, X. Chen and Y.Z. Chen. “SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence”. Nucleic Acids Research, 31, 3692–3697, 2003
9 G.C. Sahoo, M.R. Dikhit and P. Das. “ Functional assignment to JEV proteins using SVM”. Bioinformation, 3, 1-7, 2008
10 Y. Qing. “Bioinformatics databases and tools in virology research: An overview”. In Silico Biology, 8, 0008 ,2008
11 http://www.ebi.ac.uk/Tools/emboss/align/index.html
12 www.phpro.org
13 M. R. Dikhit , S.P. Rana, P. Das, and Ganesh Chandra Sahoo. “ CHPVDB ? a sequence annotation database for Chandipura Virus”. Bioinformation. 3(7): 299–302, 2009
14 A. Abdo and N. Salim. “Inference Networks for Molecular Database Similarity Searching”. International Journal of Biometric and Bioinformatics, 2 (1) 1-16, 2008
15 Davidson, S.B., Overton, C., Buneman, P., 1995. Challenges in integrating biological data sources. Journal of Computational Biology, 2(4):557–572.
 
 
 
 
 
 
 
 
Manas Ranjan Dikhit : Colleagues
Ganesh Chandra Sahoo : Colleagues
Pradeep Das : Colleagues  
 
 
 
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