Home   >   CSC-OpenAccess Library   >    Manuscript Information
Full Text Available

This is an Open Access publication published under CSC-OpenAccess Policy.
Publications from CSC-OpenAccess Library are being accessed from over 74 countries worldwide.
JEVBase: An Interactive Resource for Protein Annotationof JE Virus
Manas Ranjan Dikhit, Ganesh Chandra Sahoo, Pradeep Das
Pages - 59 - 66     |    Revised - 30-09-2009     |    Published - 21-10-2009
Volume - 3   Issue - 4    |    Publication Date - August 2009  Table of Contents
JEVBase, SVMProt, , Protein annotation database, Functional database, Japanese encephalitis
Databases containing proteome ic information have become indispensable for virology related studies. Rajendra Memorial Research Institute of Medical Sciences (RMRIMS) has compiled and maintained a functional and molecular annotation database (http://www.jevbase.biomedinformri.org) commonly referred to as JEVBase. This database facilitates significant relationship between molecular analysis, cleavage sites, possible protein functional families assigned to different proteins of Japanese encephalitis virus (JEV). Identification of different protein functions and molecular analysis facilitates a mechanistic understanding of (JEV) infection and opens novel means for drug development. JEVBase database aims to be a resource for scientists working on JE virus.
CITED BY (1)  
1 Dikhit, M. R., Nathasharma, Y. P., Patel, L., Rana, S. P., Sahoo, G. C., & Das, P. (2011). A comparative protein function analysis databaseof different Leishmania strains. Bioinformation, 6(1), 20.
1 Google Scholar 
2 ScientificCommons 
3 Academic Index 
4 CiteSeerX 
5 refSeek 
6 iSEEK 
7 Socol@r  
8 ResearchGATE 
9 Bielefeld Academic Search Engine (BASE) 
10 Scribd 
11 WorldCat 
12 SlideShare 
14 PdfSR 
15 Free-Books-Online 
1 T. Solomon, L. T. T. Thao, N. M. Dung, R. Kneen, N. T. Hung, A. Nisalak, D. W. Vaughn, J. Farrar, T. T. Hien, N. J. White and M. J. Cardosa. “ Rapid Diagnosis of Japanese Encephalitis by Using an Immunoglobulin M Dot Enzyme Immunoassay”. Journal of Clinical Microbiology, 36, 2030-2034, 1998
2 E.L. Buescher and W. F. Scherer. “Ecologic studies of Japanese encephalitis virus in Japan. IX. Epidemiologic correlations and conclusions”. Am. J. Trop. Med. Hyg., 8,719-722, 1959
3 H. Sumiyoshi, C. Mori, I. Fuke, K. Morita, S. Kuhara, J. Kondou, Y. Kikuchi, H. Nagamatu and A. Igarashi. “Complete nucleotide sequence of the Japanese encephalitis virus genome RNA”. Virology, 161, 497-510, 1987
4 F. Zhang, W. Ma, L. Zhang, M. Aasa-Chapman and H. Zhang. “Expression of particulate-form of Japanese encephalitis virus envelope protein in a stably transfected Drosophila cell line”. Virology, 4, 17-24, 2007
5 X. Liu, S. Cao, R. Zhou, G. Xu, S. Xiao, Y. Yang, M. Sun, Y. Li and H. Chen. “Inhibition of Japanese encephalitis virus NS1 protein expression in cell by small interfering RNAs”, Virus Genes, 33, 69-75, 2006
6 D. Eisenberg, C.A. Marcotte, I. Xenarios and T.O. Yeates. “Protein function in the post-genomic era”. Nature , 405, 823–826, 2000
7 S. Henikoff, E. A. Greene, S. Pietrokovski, P. Bork,T.K. Attwood and L. Hood. “Gene families: the taxonomy of protein paralogs and chimeras”. Science, 278, 609–614, 1997
8 C.Z. Cai, L.Y. Han, Z.L. Ji, X. Chen and Y.Z. Chen. “SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence”. Nucleic Acids Research, 31, 3692–3697, 2003
9 G.C. Sahoo, M.R. Dikhit and P. Das. “ Functional assignment to JEV proteins using SVM”. Bioinformation, 3, 1-7, 2008
10 Y. Qing. “Bioinformatics databases and tools in virology research: An overview”. In Silico Biology, 8, 0008 ,2008
11 http://www.ebi.ac.uk/Tools/emboss/align/index.html
12 www.phpro.org
13 M. R. Dikhit , S.P. Rana, P. Das, and Ganesh Chandra Sahoo. “ CHPVDB ? a sequence annotation database for Chandipura Virus”. Bioinformation. 3(7): 299–302, 2009
14 A. Abdo and N. Salim. “Inference Networks for Molecular Database Similarity Searching”. International Journal of Biometric and Bioinformatics, 2 (1) 1-16, 2008
15 Davidson, S.B., Overton, C., Buneman, P., 1995. Challenges in integrating biological data sources. Journal of Computational Biology, 2(4):557–572.
Mr. Manas Ranjan Dikhit
Rajendra Memorial Research Institute of Medical Sciences - India
Mr. Ganesh Chandra Sahoo
- India
Mr. Pradeep Das
- India