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A Registration Algorithm for the Identification of Individual Parrots Based on the Patterns of Filing Ridges on the Internal Surface of Their Upper Bill Tip
Thomas C. Redd, Brooke H. Dubansky, Michelle L. Osborn, Thomas N. Tully, Dominique G. Homberger
Pages - 68 - 91     |    Revised - 15-05-2012     |    Published - 20-06-2012
Volume - 6   Issue - 3    |    Publication Date - June 2012  Table of Contents
Biometrics, Registration, Parrots, Conservation, Filing Ridges, Fingerprinting, Pattern Recognition
Ridges on the internal side of the upper bill tip (i.e., “filing ridges”) of parrots and some cockatoos form patterns that are characteristic of genera and, therefore, can be used for the classification of parrots and cockatoos. These patterns are also individually variable and, thus, could be used to fingerprint individual parrots. The objectives of our project were to evaluate the degree of individual variability and to develop a method and algorithm for registering and comparing the patterns of ridges by using a rigid registration technique. Within the data sets, we have been able to successfully identify each anonymized specimen using this method. For 22 of the 27 anonymized specimens, we found a degree of magnitude (the total error taken as the sum of distances between corresponding points) to be on the scale of 101 or greater between the match with the correct specimen and the match with all other members of the data set via a squared residual error assessment. For the remaining specimens, instances occurred in which the difference was smaller for two birds, but the correct bird was identified, nonetheless, while accurately ruling out over 90% of the incorrect bird matches.
CITED BY (1)  
1 Duyck, J., Finn, C., Hutcheon, A., Vera, P., Salas, J., & Ravela, S. (2015). Sloop: A pattern retrieval engine for individual animal identification. Pattern Recognition, 48(4), 1059-1073.
1 Google Scholar 
2 CiteSeerX 
3 refSeek 
4 Scribd 
5 SlideShare 
6 PdfSR 
B. Barry, G. Corkery, U. Gonzales-Barron, K. Mc Donnell, F. Butler, and S. Ward. “A longitudinal study of the effect of time on the matching performance of a retinal recognition system for lambs”. Computers and Electronics in Agriculture, 64 (2): 202-211, 2008. http://dx.doi.org/10.1016/j.compag.2008.05.011
B. Calvo and R.W. Furness. “A review of the use and the effects of marks and devices on birds”. Ringing and Migration, 13: 129-151, 1992
BirdLife International. “Threatened birds of the world”. Lynx Editions and BirdLife International, Barcelona, Spain, and Cambridge, UK. 2000
C.J. Herzog, R.W. Kays, J.C. Ray, M.E. Gompper, W.J. Zielinski, R. Higgins, and M. Tymeson. “Using patterns in track-plate footprints to identify individual fishers”. Journal of Wildlife Management, 71 (3): 955-963, 2007
C.W. Speed, M. G. Meekan, and C.J.A. Bradshaw. “Spot the match – wildlife photoidentification using information theory”. Frontiers in Zoology, 4 (2) 2007 doi:10.1186/1742- 9994-4-2
D.G. Homberger and V. Ziswiler. “Funktionell-morphologische Untersuchungen am Schnabel von Papageien. [Functional morphological studies on the bill of parrots]”. Revue Suisse de Zoologie, 79: 1038-1048, 1972
D.G. Homberger, A. Castille, B. Dubansky, B.A. Hopkins, D. Sanchez-Migallon Guzman, L. Roundtree, and T.N. Tully. “Determining individual characteristics of palatal and maxillary filing ridges in the beaks of Hispaniolan Amazon parrots (Amazona ventralis)”. Proceedings of the 9th European Association of Avian Veterinarians Conference and 7th European College of Avian Medicine & Surgery Scientific Meeting, Zurich, Switzerland. pp. 59-60, March 27-31, 2007
D.G. Homberger, B.A. Hopkins, M. Osborn, A. Castille, H.H. Bragulla, K.L. Matthews II, H. Barnett, L. Butler, and T.N.Tully. “The ridge pattern of the cornified oral surface of the upper beak of parrots: Individuality and genus-level character”. Journal of Morphology, 268 (12): 1086, 2007
D.G. Homberger. “Functional morphology and evolution of the feeding apparatus in parrots, with special reference to the Pesquet's Parrot, Psittrichas fulgidus (Lesson)”. Conservation of New World Parrots (R.F. Pasquier, ed.). International Council for Bird Preservation Technical Paper No. 1. Smithsonian Institution Press, Washington, D.C. pp. 471-485, 1980a
D.G. Homberger. “Funktionell morphologische Untersuchungen zur Radiation der Ernährungs und Trinkmethoden der Papageien (Psittaci). [Functional morphological studies on the radiation of the feeding and drinking methods of the parrots]”. Bonner Zoologische Monographien, No. 13: 1-192, 1980b
D.G. Homberger. “The Classification and the Status of Wild Populations of Parrots”. Manual of Parrot Behavior (A. Luescher, ed.). Blackwell Publishing, Ames, Iowa. pp. 3-12, 2006
D.G. Homberger. “The comparative biomechanics of a prey-predator relationship: The adaptive morphologies of the feeding apparatus of Australian Black-Cockatoos and their foods as a basis for the reconstruction of the evolutionary history of the Psittaciformes”. Vertebrate Biomechanics and Evolution (V.L. Bels, J.-P. Gasc, and A. Casinos, eds.). BIOS Scientific Publishers, Oxford. pp. 203-228, 2003
E. Iñigo-Elias and M.A. Ramos. “The psittacine trade in Mexico”. Neotropical wildlife use and conservation (J.G. Robinson and K.H. Redford, eds.). University of Chicago Press, Chicago, IL. pp. 380-392, 2010
H. Minagawa, T. Fujimura, M. Ichiyanagi, and K. Tanaka. “Identification of beef cattle by analyzing images of their muzzle patterns lifted on paper”. Publications of the Japanese Society of Agricultural Informatics, 8: 596-600, 2002. http://www.jsai.or.jp/afita/afitaconf/ 2002/part8/p596.pdf
H.J. Johnson and G.E. Christensen. “Consistent Landmark and Intensity-Based Image Registration”. IEEE Transactions on Medical Imaging, 21 (5): 450-461, 2002
http://www.interpol.int/INTERPOL-expertise/Forensics/Fingerprints June 12, 2012
I.E. Dror, C. Champod, G. Langenburg, D. Charlton, H. Hunt, R. Rosenthal. “Cognitive issues in fingerprint analysis: Inter- and intra-expert consistency and the effect of a ‘target’ comparison”. Forensic Science International, 208: 10-17, 2011
J.B. Thomsen and A. Brautigam. “Sustainable use of Neotropical parrots”. Neotropical wildlife use and conservation (J.G. Robinson and K.H. Redford, eds.). University of Chicago Press, Chicago, IL. pp. 359-379, 2010
J.F. Masello, A. Sramkova, P. Quillfeldt, J.T. Epplen, and T. Lubjuhn. “Genetic monogamy in burrowing parrots Cyanoliseus patagonus?” Journal of Avian Biology, 33 (1): 99-103, 2002.
J.G. Daugman. “High Confidence Visual Recognition of Persons by a Test of Statistical Independence”. IEEE Transactions on Pattern Analysis and Machine Intelligence, 15 (11): 1148-1161, 1993
J.M. Fitzpatrick, D.L.G. Hill, and C.R. Maurer, Jr. Handbook of Medical Imaging, volume 2: Medical Image Processing and Analysis. ch. 8. SPIE Press, Washington, USA (2000)
J.M. Fitzpatrick, D.L.G. Hill, and C.R. Maurer, Jr. “Predicting error in rigid-body, point-based registration”. IEEE Transactions on Medical Imaging, 17: 694-702, 1998
J.M. Meyers. “Leg bands cause injuries to parakeets and parrots”. North American Bird Bander, 19 (4): 133-136, 1994
J.W. Griffin, B. Pan, M.A. Polley, P.N. Hoffman, and M.H. Farah. “Measuring nerve regeneration in the mouse”. Experimental Neurology, 223 (1): 60-71, 2010
Jain, L. Hong, and S. Pankanti. “Biometric Identification”. Communications of the ACM, 43 (2): 90-98, 2000
K.S. Arun, T.S. Huang, and S.D. Blostein. “Least-squares fitting of two 3-D point sets”. IEEE Transactions on Pattern Analysis and Machine Intelligence, 5: 698-700, 1987
L. Hong, A. Jain, S. Pankanti, and R. Bolle. “Identity Authentication Using Fingerprints”. In Proceedings of the First International Conference on Audio- and Video-Based Biometric Person Authentication, pp.103-110, March 12-14, 1997
M. Low, D. Eason, and K. McInnes. “Evaluation of passive integrated transponders for identification of Kakapo, Strigops habroptilus”. Emu, 105: 33-38, 2005
N. Kummerfeld, W. Meyer, and R. Herrmann. “Nichtinvasive Methoden zur individuellen Kennzeichnung und Identifizierung von Papageien und Greifvögeln. [Non-invasive methods for the individual marking and identification of parrots and raptors]“. Kleintierpraxis, 47 (4): 239-243, 2002
N. Ritter, R. Owens, J. Cooper, R.H. Eikelboom, and P.P. van Saarloos. “Registration of stereo and temporal images of the retina”. IEEE Transactions on Medical Imaging, 18 (5): 404-418, 1999
R. Caparroz, C.Y. Miyaki, M.I. Bampi, and A. Wajntal. “Analysis of the genetic variability in a sample of the remaining group of Spix's Macaw (Cyanopsitta spixii, Psittaciformes: Aves) by DNA fingerprinting”. Biological Conservation, 99 (3): 307-311, 2001
S. Broad, T. Mulliken, and D. Roe. “The nature and extent of legal and illegal trade in wildlife”. The Trade in Wildlife: Regulation for Conservation. Earthscan, London. pp. 3-23, 2003
S.R. Beissinger and N.F.R. Snyder. “New World parrots in crisis: Solutions from conservation biology.” Smithsonian Institution Press, Washington, DC. 1992
T. Burghardt and N. Campbell. “Visual biometrics on deformable coat-patterns”. Proceedings of the 5th International Conference on Computer Vision Systems ICVS 2007. http://biecoll.ub.uni-bielefeld.de. ISBN 978-3-00-020933-8
V. Pratt. “Direct least-squares fitting of algebraic surfaces”. ACM SIGGRAPH Computer Graphics, 21 (4): 145-152, 1987
Dr. Thomas C. Redd
- United States of America
Dr. Brooke H. Dubansky
- United States of America
Dr. Michelle L. Osborn
- United States of America
Dr. Thomas N. Tully
- United States of America
Dr. Dominique G. Homberger
- United States of America